Hub genes analysis

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August undefined, 2024

WebIdentification of hub genes and analysis of modules from PPI networks. According to the information from STRING, the top five hub nodes were selected, including interleukin 6 … Web24 jun. 2024 · GO and KEGG enrichment analysis demonstrated that DEGs of MN were preponderantly associated with cell damage and complement cascade-related immune …

[PDF] Alterations of 63 hub genes during lingual carcinogenesis in ...

WebTranscriptome profiling and network pathway analysis of genes associated with invasive phenotype in oral cancer. / Kang, Chung Jan ; Chen, Yin Ju ; Liao, Chun Ta 等. 於: Cancer Letters , 卷 284, 編號 2, 01.11.2009, p. 131-140. WebIn our study, we selected the top ten genes as hub genes. Results Identification of DEGs in DM After standardizing the microarray results, we identified 467 DEGs in GSE50397. Among these DEGs, 255 genes were up-regulated, and 212 genes were down-regulated. philo vance movies wikipedia

Genes Free Full-Text WGCNA Analysis Revealed the Hub Genes …

Web3 dec. 2024 · To verify these hub genes in an external dataset, GEO was searched with the key words 'atrial fibrillation'. The inclusion criteria for the validation dataset were as follows: i) Atria samples from individuals with persistent AF … WebEnsuring food is free of contaminants is vital for manufacturers. Contaminated or sub-standard products released to the market can harm customers and do severe financial and reputational damage to the producer. To combat this issue, US-based testing laboratory Accelerated Analytical helps producers analyse food produce for common pathogens on … Web13 apr. 2024 · Pathway analysis revealed that the Wnt signaling pathway may be responsible for horn development. Further, through combining the protein–protein … philo vs at\u0026t

Metadata analysis to explore hub of the hub-genes highlighting …

Bioinformatic Analysis of miR-200b/429 and Hub Gene Network …

Web2 dagen geleden · The hub genes were selected by Cytoscape software based on the protein-protein interaction network of the overlapping genes using STRING database. The functional analysis of hub genes was performed by R software and the protein expression was identified by immunohistochemistry. WebMETHODS: We downloaded FGR-related gene microarray data, used weighted gene co-expression network analysis (WGCNA), differentially expressed genes (DEGs), and protein-protein interaction (PPI) networks to screen hub genes. The GSE24129 gene set was used for validation of critical gene expression levels and diagnostic capabilities. philovelo segway stuttgartWeb4 apr. 2024 · Hub genes were identified by intersecting candidate hub genes in protein-protein interaction network and candidate hub genes in key modules. Single-sample gene set enrichment analysis was utilized to quantify the abundance of tumor-infiltrating immune cells in VSs and normal control nerves. t shirts for redheads

"Web9 apr. 2024 · Saline-alkali stress seriously affects the yield and quality of crops, threatening food security and ecological security. Improving saline-alkali land and increasing effective cultivated land are conducive to sustainable agricultural development. Trehalose, a nonreducing disaccharide, is closely related to plant growth and development and stress … " - Hub genes analysis

Hub genes analysis

Frontiers Identification of Hub Genes and Key Pathways …

Web7 sep. 2024 · PPI network construction and hub genes selection and analysis. The PPI network of DEGs with combined scores greater than 0.4 was generated by Cytoscape, … Web13 jan. 2024 · Using pairwise comparisons and weighted gene coexpression network analysis (WGCNA), we identified modules of coexpressed genes and candidate hub genes for each developmental stage and for genotypes with different seed size. We further overexpressed a candidate seed size regulatory gene, GmCYP78A5, in soybean.

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Web7 mrt. 2024 · The cancer hallmark enrichment analysis showed hub genes to promote growth, sustained proliferation, resistance to apoptosis, induction of angiogenesis, activation of invasion, and metastasis, enabling replicative immortality, evading immune destruction, and tumor-promoting inflammation. Web13 apr. 2024 · HIGHLIGHTS. who: Md. Selim Reza from the Department of Veterinary and Animal Sciences, University of Rajshahi, Rajshahiu20116205, Bangladesh have published the article: Metadata analysis to explore hub of the hub-genes highlighting their functions, pathways and regulators for cervical cancer diagnosis and therapies, in the Journal: …

Web3 mei 2024 · Five hub genes (CDC20, CCNA2, KIF11, KIF2C and PLK1) and one significant module (score = 17.39) were identified through protein–protein interaction … Web30 apr. 2024 · 3.2. Analysis of Gene Ontology and KEGG Pathway. The analysis of GO revealed that DEGs were mostly in association with positive regulation by a host of viral …

WebProtein–protein interaction analysis of 90 target genes of miR-200b/429 identified EZH2, FLT1, IGF2, IRS1, JUN, KDR, SOX2, MYB, ZEB1, and TIMP2 as the top ten hub genes. PI3K–AKT and MAPK signaling pathways emerged as major target pathways of miR-200b/429 and their hub genes. Web7 apr. 2024 · TC-seq was employed to analyze the trend of gene expression and clustering analysis. IL-17 therapeutic immune response genes were selected by taking the …

WebNon-alcoholic fatty liver disease, hepatocellular carcinoma, bioinformatics analysis, hub genes. EISSN 2148-5607. TJG IS INDEXED IN OF SCIENCE AND PUBMED IMPACT FACTOR: 1.555. Turkish Journal of Gastroenterology Toggle navigation. ARCHIVE ... Identification of Hub Genes an...

Web7 apr. 2024 · The degradation of pectin was dominated by two PME genes, one Pel gene and four PG genes in custard apple. Among of them, Cluster-11063.12474 , Cluster-11063.8590 , Cluster-141.0 , Cluster-11063.4618 , and Cluster-11063.11745 showed higher levels during the early period storage (day 0), in contrast, the expressions of Cluster … t shirts for plus size womenWeb1 apr. 2024 · Screening-stage specific module and hub-gene using WGCNA. By WGCNA analysis, we identified a variety-specific module at different stages. At the T1 stage, many genes encoding plant-hormone signal-transduction proteins and transcription factors were highly expressed in this module. We identified four WRKY family transcription factors ... philo vance movies list william powellWebHub Genes Screening, Survival Analysis, and Expression Validation. Plug-in cytohubba of Cytoscape was used to identify hub genes from the whole PPI network. According to the … tshirts for printing near meWeb22 aug. 2024 · Lingual mucosa samples representative of normal tissue (week 0) and early (week 12) and advanced (week 28) tumorigenesis were harvested for microarray and methylated DNA immunoprecipitation sequencing (MeDIP-Seq). Combined analysis with Short Time-series Expression Miner (STEM), the Cytoscape plugin… View on Springer … philo verses frndlyWeb6 apr. 2024 · Assessing the glioma samples’ infiltration in The Cancer Gene Atlas (TCGA) through the single-sample Gene Set Enrichment Analysis (ssGSEA) with migration and invasion gene sets could help researchers better understand the infiltration of gliomas and provide novel therapeutic targets for the treatment ofgliomas. The current database has … t shirts for printing ukThe GSE12024 and GSE100927 datasets were used in verifying the expression of the identified hub genes. The mRNA expression levels of CSF1R, CD86, ITGB2, PTPRC, and CD53 were significantly increased in the RA samples compared with the ND samples (P < 0.05, Fig. 5a). In addition, the mRNA … Meer weergeven DEGs were identified after the microarray results were standardized (Supplementary Fig. 1a–d). A total of 2735 DEGs were found in the RA datasets (GSE55235 and GSE55457), … Meer weergeven Two TFs that may regulate the expression of the hub genes were identified on the basis of the Transcriptional Regulatory Relationships … Meer weergeven The top 20 hub genes were calculated using the seven algorithms of the plug-in CytoHubba (Fig. 3a). After the intersection of the UpSet diagram was determined, 12 common hub … Meer weergeven t shirts for printing wholesaleWeb6 jun. 2024 · In order to more effectively search for the hub genes’ response to HS, we performed an interaction network analysis of IR64 and Koshihikari key genes with … philo vance basil rathbone