Short time-series expression miner analysis
Splet22. okt. 2024 · By short time-series expression miner (STEM) analysis, Gene Ontology analysis, and lncRNA-mRNA co-expression network analyses, we identified some key molecules specifically related to... SpletShort time-series expression miner analysis revealed some lncRNAs whose expressions might correlate with disease activity of SLE patients. Coding-non-coding gene …
Short time-series expression miner analysis
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Splet15. mar. 2024 · Transcriptome sequencing was performed on fibrotic joint capsule samples in four groups followed by bioinformatics analyses including differentially expressed … SpletSTEM is a Java program for clustering, comparing, and visualizing short time series gene expression data (eight time points or less). STEM allows researchers to identify significant temporal expression profiles and the genes associated with these profiles and to compare the behavior of these genes across multiple conditions.
Splet08. nov. 2024 · Short time-series expression miner (STEM) program is a Java-based software specifically designed for the analysis of short time-series microarray gene expression data [ 13 ]. Here, undifferentiated hESC-H9, H9-CD34 + cells, and UC-CD34 + cells were set as time series, which started at undifferentiated hESC-H9. SpletThe Short Time-series Expression Miner (STEM) is a Java program for clustering, comparing, and visualizing short time series gene expression data from microarray experiments (~8 time points or fewer). ... STEM: a tool for the analysis of short time series gene expression data. BMC Bioinformatics, 7:191, 2006.
Splet Short Time-Series Expression Miner (STEM) analysis of gene expression profile. Squares of the same color indicate that the correlation is >0.7. (A) Trend analysis of genes. Gene... SpletPred 1 dnevom · Time-series expression analysis. The short time-series expression miner (STEM) was used to investigate the pattern of differentially abundant protein (DAP) expression during the 8 stages (Additional file 2: Table S2).The typical abundance patterns of proteins (P < 0.05) were profile 1, profile 4 and profile 5 (Fig. 4A).The expression …
Splet15. mar. 2024 · Short Time-Series Expression Miner (STEM) Analysis. For overlapping DEGs obtained in the previous step, significant similarity clustering of expression patterns was performed using Short Time-series Expression Miner (STEM) version 1.3.11. Citation 21 The similarity threshold was 0.8, and significance threshold was P < 0.05. DEGs in …
SpletShort Time-Series Expression Miner (STEM) analysis of DEG expression profiles. (A) Each box corresponds to a type expression profile and only colored profiles are statistically... stores like century 21 department storeSplet17. jun. 2024 · Short time-series expression miner (STEM) analysis The STEM analysis of the total DEGs of four important temporal gene expression profiles (81_Y, 20_Y, 81_H and 20_H) was performed using the STEM version 1.3.11 … stores like chadwicksSplet01. mar. 2024 · To better explore the expression pattern of the DEGs via three comparisons, the total DEGs with similar expression patterns in four multiple samples were clustered via Short Time-series Expression Miner (STEM) software. Profile with P values ≤ 0.05 were considered to be significant. stores like bath and bodyhttp://www.sb.cs.cmu.edu/stem/ rosenberg philatelics phone numberSpletBelow are some of the papers using the Short Time-series Expression Miner (STEM)software or method as part of the data analysis: M. Chamankhah, E. Eftekharpour, S. Karimi-Abdolrezaee, P.C. Boutros, S. San-Marina, M.G. Fehlings. Genome-wide gene expression profiling of stress response in a spinal cord clip compression injury model. rosenberg philosophySpletShort time-series expression miner (STEM) analysis (15) was performed to obtain LncRNA and mRNA expression profiles, which were subsequently compared for significance and … stores like christy dawnSplet22. okt. 2024 · By short time-series expression miner (STEM) analysis, Gene Ontology analysis, and lncRNA-mRNA co-expression network analyses, we identified some key … stores like circuit city